SNP Profiles of ICS 8 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
1._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
2._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
3._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
4._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
5._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
6._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
7._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
8._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
9._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
10._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
11._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
12._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
13._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
14._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
15._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	_	GG
16._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	CT	GG
17._GC-05-53-2-4	AA	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	AG	GG
18._GC-05-53-2-4	AG	AA	CC	GG	AA	AC	AG	AC	_	_	AA	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
1._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
2._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
3._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
4._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
5._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
6._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
7._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
8._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
9._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
10._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
11._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
12._GC-08-054-1-65	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
13._GC-08-054-1-65	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
14._ICS_8	CT	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC
15._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC
16._ICS_8	CT	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	AC
17._GC-05-53-2-4	AG	AA	GG	AA	GG	CC	CC	_	AA	CC	CC	AA	_	CC
18._GC-05-53-2-4	AA	AA	GG	AA	GG	CG	CC	_	AA	AC	CG	AA	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
1._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
2._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
3._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
4._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
5._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
6._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
7._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
8._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
9._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
10._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
11._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
12._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
13._GC-08-054-1-65	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
14._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
15._ICS_8	AA	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X
16._ICS_8	AA	AG	AA	CC	AG	_	AC	CT	GT	AC	TT	GG	X_X	X_X
17._GC-05-53-2-4	_	GG	AA	GG	AG	GG	AC	AG	AC	AC	TT	GG	X_X	X_X
18._GC-05-53-2-4	_	GG	AA	GG	AA	GG	AA	AG	AC	CC	AT	GG	X_X	X_X

Input profile: ICS_8

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Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_8 GC-08-054-1-65

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

2._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._ICS_8 GC-08-054-1-65

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

8._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

9._ICS_8

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

10._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

11._ICS_8

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

12._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

13._ICS_8 GC-08-054-1-65

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

15._ICS_8

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

16._ICS_8

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 1

Notes: MCCS_Selection_parents

18._ICS_8 GC-05-53-2-4

37.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 4

Notes: MCCS_Selection_parents

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25